Unipro UGENE 1.7

* Multiple sequence alignment using MUSCLE 3,4 and KAlign;
* HMM profiles build and search, based on the source of HMMER 2 and HMMER 3;
* PCR Primers design using Primer 3;
* Protein secondary structure prediction using GOR IV and PSIPRED;
* Phylogenetic analysis with Phylip;
* Search for restriction enzymes and integration with REBASE;
* Extremely fast repeat finder;
* DNA reference assembly using Bowtie;
* Search for transcription factor binding sites using SITECON;
* Protein back translation;
* ORF finder;
* Complete Smith-Waterman algorithm implementation.

User Interface:

* Visual and interactive genome browsing;
* Multiple alignment editor;
* Chromatograms visualization;
* 3D viewer for files in PDB and MMDB formats with anaglyph stereo mode support;
* Phylogenetic tree viewer;
* Easy to use workflow designer for custom computational workflows.

High performance computing in UGENE

* Complete support of modern multicore processors and SSE instructions;
* Out of the box support of modern GPUs using NVIDIA CUDA and ATI Stream;
* Integrated solutions for Cell Broadband Engine;
* Support for supercomputers and distributed computing.

Cooperation:

* Can be used for education purposes in schools and universities;
* Features to be included into the next release are initiated by users;
* UGENE team is ready for collaboration in related projects, both free or commercial.