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0.0
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Total downloads
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506
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Last update
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June 20, 2010
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Publisher
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Egon Willighagen
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License
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Free |
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OS
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Windows
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Size
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18 MB
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Description
Jmol is a free, open source molecule viewer for students, educators, and researchers in chemistry and biochemistry. It is cross-platform, running on Windows, Mac OS X, and Linux/Unix systems.
* The JmolApplet is a web browser applet that can be integrated into web pages. * The Jmol application is a standalone Java application that runs on the desktop. * The JmolViewer is a development tool kit that can be integrated into other Java applications.
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"Jmol 12.0 RC19 / 11.8.24" Features:
* Free, open-source software licensed under the GNU Lesser General Public License * Applet, Application, and Systems Integration Component o The JmolApplet is a web browser applet that can be integrated into web pages. It is ideal for development of web-based courseware and web-accessible chemical databases. The JmolApplet provides an upgrade path for users of the Chime plug-in. o The Jmol application is a standalone Java application that runs on the desktop. o The JmolViewer can be integrated as a component into other Java applications. * Multi-language
o Translated into multiple languages: Catalan (ca), Chinese (both zh_CN and zh_TW) Czech (cs), Dutch (nl), French (fr), German (de), Hungarian (hu), Italian (it), Korean (ko), Portuguese - Brazil (pt_BR), Spanish (es), Turkish (tr), (in addition to the native American English, en-US, and British English, en-GB). o Automatically adopts the language of the user's operating system, if it is among the translations available. You can change to another language if desired. o For up-to-date details or instructions for adding your language, see the Wiki.
* Cross-platform
o Windows o Mac OS X o Linux / Unix
* Supports all major web browsers: Internet Explorer, Mozilla and Firefox, Safari, Google Chrome, Opera, Konqueror, IceWeasel, ... * High-performance 3D rendering with no hardware requirements * File formats (see also the file formats section within Jmol Wiki):
MOL MDL / Elsevier / Symyx structure (classic version V2000) V3000 MDL / Elsevier / Symyx structure (new version V3000) SDF MDL / Elsevier / Symyx structure (multiple models) CTFile MDL / Elsevier / Symyx chemical table (generic) CIF Crystallographic Information File - standard from the International Union of Crystallography mmCIF Macromolecular Crystallographic Information File - standard from the International Union of Crystallography CML Chemical Markup Language PDB Protein Data Bank - Research Collaboratory for Structural Bioinformatics XYZ XYZ format, XMol file - Minnesota Supercomputer Institute XYZ+vib XYZ format with added vibrational vector information XYZ-FAH XYZ format for Folding@home MOL2 Sybyl, Tripos Alchemy Tripos CSF Fujitsu CAChe chemical structure, now Fujitsu Sygress GAMESS General Atomic and Molecular Electronic Structure System output (both US and UK variants) - Gordon Research Group, Iowa State University Gaussian Gaussian 94/98/03 output - Gaussian, Inc. Cube Gaussian, Inc. Ghemical The Ghemical computational chemistry package MM1GP Ghemical molecular mechanics file HIN HIN / HIV files from HyperChem - Hypercube, Inc. Jaguar Schrodinger, LLC MOLPRO Molpro output MOPAC MOPAC 93/97/2002 output (public domain) MGF MOPAC 2007 (v.7.101) graphf output (public domain) NWCHEM NWChem output - Pacific Northwest National Laboratory odydata Odyssey data - WaveFunction, Inc. xodydata Odyssey XML data - WaveFunction, Inc. QOUT Q-Chem, Inc. SHELX Structural Chemistry Department, University of G�ttingen (Germany) SMOL Spartan data - Wavefunction, Inc. spinput Spartan data - Wavefunction, Inc. GRO Gromos87 format from GROMACS PQR Modified pdb format including charge and radius Amber The Amber package of molecular simulation programs JME Java Molecular Editor - Peter Ertl CASTEP The CASTEP software package, uses density functional theory FHI-aims Full-potential / all-electron electronic structure theory with local orbitals - Fritz-Haber-Institut der Max-Planck-Gesellschaft VASP VASP / VAMP / Vienna ab-initio simulation package DGrid Miroslav Kohout, Max-Planck Institute ADF ADF output - Amsterdam Density Functional XSD Accelrys Materials Studio AGL ArgusLab DFT Wien2k AMPAC AMPAC output - Semichem, Inc. WebMO WebMO interface to computational chemistry packages Molden Electron density / molecular orbitals PSI3 Output files from the PSI3 suite of quantum chemical programs
* Files which are compressed with gzip will automatically be decompressed * Animations * Vibrations * Surfaces * Orbitals * Support for unit cell and symmetry operations * Schematic shapes for secondary structures in biomolecules * Measurements
o distance o angle o torsion angle
* Support for RasMol/Chime scripting language * JavaScript support library (Jmol.js) * Exports to jpg, png, gif, ppm, pdf, POV-Ray, Gaussian, Maya, vrml, x3d, idtf, web page.
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Jmol 12.0 RC19 / 11.8.24 Copyright Information
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